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Info • Umbelopsis isabellina AD026 v1.0

Status

[November 2017] The Umbelopsis isabellina AD026 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Umbelopsis isabellina AD026 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 21.83
Sequencing read coverage depth 262.018x
# of contigs 49
# of scaffolds 47
# of scaffolds >= 2Kbp 43
Scaffold N50 9
Scaffold L50 (Mbp) 0.85
# of gaps 2
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.26, 1.68, 1.20


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 38897 38494 99.0%
Ests est.fasta 181538320 175755354 96.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1855 1616
transcript 1563 1357
exon 329 195
intron 80 70
description:
protein length (aa) 448 370
exons per gene 4.75 4
# of gene models 9193


Collaborators

Gregory Bonito, Michigan State University

Joseph Spatafora, Oregon State University

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.