Info • Umbilicaria pustulata


The genome sequence and gene models of Umbilicaria pustulata (syn. Lasallia pustulata) were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on September 06, 2017. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.

Summary statistics for the Umbilicaria pustulata release are below.
Genome Assembly
Genome Assembly size (Mbp) 39.23
Sequencing read coverage depth
# of contigs 5306
# of scaffolds 3891
# of scaffolds >= 2Kbp 1232
Scaffold N50 96
Scaffold L50 (Mbp) 0.10
# of gaps 1415
% of scaffold length in gaps 2.2%
Three largest Scaffolds (Mbp) 0.79, 0.58, 0.44

Gene Models ExternalModels
length (bp) of: average median
gene 1890 1450
transcript 1531 1218
exon 462 248
intron 147 61
protein length (aa) 510 406
exons per gene 3.32 3
# of gene models 8268

Genome Reference(s)


This project was not sequenced at the JGI.