Status
The genome sequence and gene models of Umbilicaria pustulata (syn. Lasallia pustulata) were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on September 06, 2017. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.
Summary statistics for the Umbilicaria pustulata release
are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 39.23 |
| Sequencing read coverage depth | |
| # of contigs | 5306 |
| # of scaffolds | 3891 |
| # of scaffolds >= 2Kbp | 1232 |
| Scaffold N50 | 96 |
| Scaffold L50 (Mbp) | 0.10 |
| # of gaps | 1415 |
| % of scaffold length in gaps | 2.2% |
| Three largest Scaffolds (Mbp) | 0.79, 0.58, 0.44 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1890 | 1450 |
| transcript | 1531 | 1218 |
| exon | 462 | 248 |
| intron | 147 | 61 |
| description: | ||
| protein length (aa) | 510 | 406 |
| exons per gene | 3.32 | 3 |
| # of gene models | 8268 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Dal Grande F, Sharma R, Meiser A, Rolshausen G, Büdel B, Mishra B, Thines M, Otte J, Pfenninger M, Schmitt I
Adaptive differentiation coincides with local bioclimatic conditions along an elevational cline in populations of a lichen-forming fungus.
BMC Evol Biol. 2017 Mar 31;17(1):93. doi: 10.1186/s12862-017-0929-8
Dal Grande F, Sharma R, Meiser A, Rolshausen G, Büdel B, Mishra B, Thines M, Otte J, Pfenninger M, Schmitt I
Adaptive differentiation coincides with local bioclimatic conditions along an elevational cline in populations of a lichen-forming fungus.
BMC Evol Biol. 2017 Mar 31;17(1):93. doi: 10.1186/s12862-017-0929-8
Funding
This project was not sequenced at the JGI.
