Info • Umbelopsis sp. nov. AD052 v1.0

Status

[October 2016] The Umbelopsis sp. 1_AD052 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Umbelopsis sp. 1_AD052 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 22.50
Sequencing read coverage depth 121.15x
# of contigs 67
# of scaffolds 67
# of scaffolds >= 2Kbp 67
Scaffold N50 12
Scaffold L50 (Mbp) 0.66
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.42, 1.41, 1.13


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 24272 22987 94.7%
Ests est.fasta 135069940 130989400 97.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1799 1528
transcript 1488 1251
exon 303 180
intron 82 73
description:
protein length (aa) 437 353
exons per gene 4.91 4
# of gene models 9369


Collaborators

Gregory Bonito, Michigan State University

Joseph Spatafora, Oregon State University

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Chang Y, Wang Y, Mondo S, Ahrendt S, Andreopoulos W, Barry K, Beard J, Benny GL, Blankenship S, Bonito G, Cuomo C, Desiro A, Gervers KA, Hundley H, Kuo A, LaButti K, Lang BF, Lipzen A, O'Donnell K, Pangilinan J, Reynolds N, Sandor L, Smith ME, Tsang A, Grigoriev IV, Stajich JE, Spatafora JW
Evolution of zygomycete secretomes and the origins of terrestrial fungal ecologies.
iScience. 2022 Aug 19;25(8):104840. doi: 10.1016/j.isci.2022.104840

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.