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Info • Unilacryma unispora MAFF 240146 v1.0

Status

[March 2020] The Unilacryma unispora MAFF 240146 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Unilacryma unispora v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 46.15
Sequencing read coverage depth 194.06x
# of contigs 55
# of scaffolds 55
# of scaffolds >= 2Kbp 55
Scaffold N50 11
Scaffold L50 (Mbp) 1.79
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.94, 2.63, 2.62


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 85532 77123 90.2%
Ests est.fasta 134992137 133662767 99.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1844 1623
transcript 1557 1380
exon 267 160
intron 61 55
description:
protein length (aa) 435 366
exons per gene 5.83 5
# of gene models 16259


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.