Info • Urocystis occulta CBS 102.71 v1.0

Status

[August 2018] The Urocystis occulta CBS 102.71 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section

Summary statistics for the Urocystis occulta CBS 102.71 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 18.57
Sequencing read coverage depth 471.2x
# of contigs 23
# of scaffolds 23
# of scaffolds >= 2Kbp 23
Scaffold N50 5
Scaffold L50 (Mbp) 1.27
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.52, 2.40, 1.69


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 16403 12452 75.9%
Ests est.fasta 149275828 147943430 99.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 2140 1812
transcript 2047 1741
exon 1264 828
intron 152 92
description:
protein length (aa) 592 485
exons per gene 1.62 1
# of gene models 6708


Collaborators

Dr. Catherine Aime, Purdue University, IN

Dr. Joseph Spatafora, Oregon State University, OR

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.