Info • Ustilago bromivora UB2112

Status

The genome sequence and gene models of Ustilago bromivora UB2112 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.

Summary statistics for the Ustilago bromivora UB2112 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 20.45
Sequencing read coverage depth
# of contigs 23
# of scaffolds 23
# of scaffolds >= 2Kbp 23
Scaffold N50 7
Scaffold L50 (Mbp) 0.88
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.11, 2.00, 1.92


Gene Models ExternalModels
length (bp) of: average median
gene 1777 1431
transcript 1704 1356
exon 1109 645
intron 139 99
description:
protein length (aa) 568 452
exons per gene 1.54 1
# of gene models 7185


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Rabe F, Bosch J, Stirnberg A, Guse T, Bauer L, Seitner D, Rabanal FA, Czedik-Eysenberg A, Uhse S, Bindics J, Genenncher B, Navarrete F, Kellner R, Ekker H, Kumlehn J, Vogel JP, Gordon SP, Marcel TC, Münsterkötter M, Walter MC, Sieber CM, Mannhaupt G, Güldener U, Kahmann R, Djamei A
A complete toolset for the study of Ustilago bromivora and Brachypodium sp. as a fungal-temperate grass pathosystem.
Elife. 2016 Nov 11;5():. doi: 10.7554/eLife.20522

Funding

This project was not sequenced at the JGI.