Info • Ustilago maydis 521 v2.0 NCBI version
Please note that this organism is for archival use only. Please see the current Ustilago maydis 521 v2.0 site for the latest data and information.

Status

The genome sequence and gene models of Ustilago maydis 521 were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on Sept 14, 2017. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.

Summary statistics for the Ustilago maydis 521 v2.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 19.66
Sequencing read coverage depth
# of contigs 254
# of scaffolds 27
# of scaffolds >= 2Kbp 27
Scaffold N50 7
Scaffold L50 (Mbp) 0.88
# of gaps 227
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 2.48, 1.88, 1.64


Gene Models ExternalModels
length (bp) of: average median
gene 1837 1509
transcript 1772 1461
exon 1233 864
intron 148 102
description:
protein length (aa) 591 487
exons per gene 1.44 1
# of gene models 6783


Genome Reference(s)

Funding

This project was not sequenced at the JGI.