Info • Ustilaginoidea virens


The genome sequence and gene models of Ustilaginoidea virens were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on 11/08/2016. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.

Summary statistics for the Ustilaginoidea virens release are below.
Genome Assembly
Genome Assembly size (Mbp) 33.57
Sequencing read coverage depth
# of contigs 139
# of scaffolds 139
# of scaffolds >= 2Kbp 139
Scaffold N50 20
Scaffold L50 (Mbp) 0.53
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.56, 1.39, 1.26

Gene Models ExternalModels
length (bp) of: average median
gene 1617 1348
transcript 1405 1173
exon 591 308
intron 156 96
protein length (aa) 468 391
exons per gene 2.38 2
# of gene models 6451

Genome Reference(s)


This project was not sequenced at the JGI.