BLAST function on our site is limited to a single organism due to maintenance activity on our computational cluster.
Info • Valetoniellopsis laxa CBS 191.97 v1.0

Status

(Dec 2014) The Valetoniellopsis laxa CBS 191.97 genome was sequenced using Illumina and assembled using AllPathsLG.

Summary statistics for the Valetoniellopsis laxa CBS 191.97 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 22.13
Sequencing read coverage depth 95
# of contigs 213
# of scaffolds 83
# of scaffolds >= 2Kbp 81
Scaffold N50 14
Scaffold L50 (Mbp) 0.60
# of gaps 130
% of scaffold length in gaps 1.0%
Three largest Scaffolds (Mbp) 1.46, 1.35, 0.97


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 23209 22991 99.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1895 1623
transcript 1731 1482
exon 631 387
intron 96 70
description:
protein length (aa) 488 403
exons per gene 2.74 2
# of gene models 8026


Collaborators

Kathryn Bushley, University of Minnesota

Derek Johnson, Oregon State University

Joey Spatafora, Oregon State University

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.