Status
The genome sequence and gene models of Vanderwaltozyma polyspora DSM 70294 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.
Genome Assembly | |
Genome Assembly size (Mbp) | 14.67 |
Sequencing read coverage depth | |
# of contigs | 411 |
# of scaffolds | 281 |
# of scaffolds >= 2Kbp | 281 |
Scaffold N50 | 38 |
Scaffold L50 (Mbp) | 0.13 |
# of gaps | 130 |
% of scaffold length in gaps | 0.1% |
Three largest Scaffolds (Mbp) | 0.50, 0.31, 0.28 |
Gene Models | ExternalModels | |
length (bp) of: | average | median |
gene | 1520 | 1212 |
transcript | 1512 | 1209 |
exon | 1469 | 1182 |
intron | 273 | 170 |
description: | ||
protein length (aa) | 504 | 403 |
exons per gene | 1.03 | 1 |
# of gene models | 5367 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Scannell DR, Frank AC, Conant GC, Byrne KP, Woolfit M, Wolfe KH
Independent sorting-out of thousands of duplicated gene pairs in two yeast species descended from a whole-genome duplication.
Proc Natl Acad Sci U S A. 2007 May 15;104(20):8397-402. doi: 10.1073/pnas.0608218104
Scannell DR, Frank AC, Conant GC, Byrne KP, Woolfit M, Wolfe KH
Independent sorting-out of thousands of duplicated gene pairs in two yeast species descended from a whole-genome duplication.
Proc Natl Acad Sci U S A. 2007 May 15;104(20):8397-402. doi: 10.1073/pnas.0608218104
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Saccharomycotina Saccharomycetes Saccharomycetales Saccharomycetaceae
Funding
This project was not sequenced at the JGI.