Info • Vavraia culicis subsp. floridensis

Status

The genome sequence and gene models of Vavraia culicis subsp. floridensis were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.


Genome Assembly
Genome Assembly size (Mbp) 6.12
Sequencing read coverage depth
# of contigs 481
# of scaffolds 379
# of scaffolds >= 2Kbp 112
Scaffold N50 21
Scaffold L50 (Mbp) 0.09
# of gaps 102
% of scaffold length in gaps 1.4%
Three largest Scaffolds (Mbp) 0.24, 0.24, 0.21


Gene Models ExternalModels
length (bp) of: average median
gene 1180 933
transcript 1180 933
exon 1178 932
intron 34 16
description:
protein length (aa) 345 259
exons per gene 1.00 1
# of gene models 2773


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Desjardins CA, Sanscrainte ND, Goldberg JM, Heiman D, Young S, Zeng Q, Madhani HD, Becnel JJ, Cuomo CA
Contrasting host-pathogen interactions and genome evolution in two generalist and specialist microsporidian pathogens of mosquitoes.
Nat Commun. 2015 May 13;6():7121. doi: 10.1038/ncomms8121

Links

Funding

This project was not sequenced at the JGI.