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Info • Veluticeps abietina OMC1657 v1.0

Status

[June 2018] The Veluticeps abietina OMC1657 genome was sequenced with PacBio, assembled with Falcon (v 1.8.8), and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Veluticeps abietina v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 43.35
Sequencing read coverage depth 264.47x
# of contigs 124
# of scaffolds 124
# of scaffolds >= 2Kbp 121
Scaffold N50 11
Scaffold L50 (Mbp) 1.25
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.59, 3.29, 2.84


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 95816 89837 93.8%
Ests est.fasta 154082979 151702822 98.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1884 1645
transcript 1510 1305
exon 235 143
intron 71 60
description:
protein length (aa) 434 358
exons per gene 6.41 5
# of gene models 13653


Collaborators

Francis Martin, INRA Nancy, France

Otto Miettinen, University of Helsinki, Finland

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.