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Info • Venturia inaequalis

Status

The genome of Venturia inaequalis was not sequenced at the JGI, but was provided by Cecilia Deng at the New Zealand Institute for Plant & Food Research Limited. JGI Eukaryotic tools were setup to assist with manual curation and comparative analysis of fungal genomes. This genome is not maintained by the author and is therefore not automatically updated.

Summary statistics for the Venturia inaequalis v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 55.13
Sequencing read coverage depth 1x
# of contigs 3498
# of scaffolds 1012
# of scaffolds >= 2Kbp 1012
Scaffold N50 62
Scaffold L50 (Mbp) 0.23
# of gaps 2486
% of scaffold length in gaps 17.3%
Three largest Scaffolds (Mbp) 1.14, 0.95, 0.90


Gene Models ExternalModels
length (bp) of: average median
gene 1493 1241
transcript 1326 1086
exon 472 263
intron 94 57
description:
protein length (aa) 442 362
exons per gene 2.81 2
# of gene models 13233


Collaborators

Cecilia Deng, The New Zealand Institute for Plant & Food Research Limited
Joanna Bowen, The New Zealand Institute for Plant & Food Research Limited
Kim Plummer, La Trobe University

Genome Reference(s)

Funding

This project was not sequenced at the JGI.