Status
The genome of Venturia pirina was not sequenced at the JGI, but was provided by Cecilia Deng at the New Zealand Institute for Plant & Food Research Limited. JGI Eukaryotic tools were setup to assist with manual curation and comparative analysis of fungal genomes. This genome is not maintained by the author and is therefore not automatically updated.
Summary statistics for the Venturia pirina v1.0 release
are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 40.93 |
| Sequencing read coverage depth | 1x |
| # of contigs | 1486 |
| # of scaffolds | 364 |
| # of scaffolds >= 2Kbp | 364 |
| Scaffold N50 | 36 |
| Scaffold L50 (Mbp) | 0.33 |
| # of gaps | 1122 |
| % of scaffold length in gaps | 4.4% |
| Three largest Scaffolds (Mbp) | 1.70, 1.20, 1.12 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1525 | 1271 |
| transcript | 1375 | 1131 |
| exon | 511 | 303 |
| intron | 91 | 57 |
| description: | ||
| protein length (aa) | 458 | 377 |
| exons per gene | 2.69 | 2 |
| # of gene models | 11890 |
Collaborators
Kim Plummer, La
Trobe University
Joanna Bowen,
The New Zealand Institute for Plant & Food Research
Limited
Cecilia Deng,
The New Zealand Institute for Plant & Food Research Limited
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Deng CH, Plummer KM, Jones DAB, Mesarich CH, Shiller J, Taranto AP, Robinson AJ, Kastner P, Hall NE, Templeton MD, Bowen JK
Comparative analysis of the predicted secretomes of Rosaceae scab pathogens Venturia inaequalis and V. pirina reveals expanded effector families and putative determinants of host range.
BMC Genomics. 2017 May 2;18(1):339. doi: 10.1186/s12864-017-3699-1
Cooke IR, Jones D, Bowen JK, Deng C, Faou P, Hall NE, Jayachandran V, Liem M, Taranto AP, Plummer KM, Mathivanan S
Proteogenomic analysis of the Venturia pirina (Pear Scab Fungus) secretome reveals potential effectors.
J Proteome Res. 2014 Aug 1;13(8):3635-44. doi: 10.1021/pr500176c
Deng CH, Plummer KM, Jones DAB, Mesarich CH, Shiller J, Taranto AP, Robinson AJ, Kastner P, Hall NE, Templeton MD, Bowen JK
Comparative analysis of the predicted secretomes of Rosaceae scab pathogens Venturia inaequalis and V. pirina reveals expanded effector families and putative determinants of host range.
BMC Genomics. 2017 May 2;18(1):339. doi: 10.1186/s12864-017-3699-1
Cooke IR, Jones D, Bowen JK, Deng C, Faou P, Hall NE, Jayachandran V, Liem M, Taranto AP, Plummer KM, Mathivanan S
Proteogenomic analysis of the Venturia pirina (Pear Scab Fungus) secretome reveals potential effectors.
J Proteome Res. 2014 Aug 1;13(8):3635-44. doi: 10.1021/pr500176c
Funding
This project was not sequenced at the JGI.
