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Info • Venturia pirina

Status

The genome of Venturia pirina was not sequenced at the JGI, but was provided by Cecilia Deng at the New Zealand Institute for Plant & Food Research Limited. JGI Eukaryotic tools were setup to assist with manual curation and comparative analysis of fungal genomes. This genome is not maintained by the author and is therefore not automatically updated.

Summary statistics for the Venturia pirina v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 40.93
Sequencing read coverage depth 1x
# of contigs 1486
# of scaffolds 364
# of scaffolds >= 2Kbp 364
Scaffold N50 36
Scaffold L50 (Mbp) 0.33
# of gaps 1122
% of scaffold length in gaps 4.4%
Three largest Scaffolds (Mbp) 1.70, 1.20, 1.12


Gene Models ExternalModels
length (bp) of: average median
gene 1525 1271
transcript 1375 1131
exon 511 303
intron 91 57
description:
protein length (aa) 458 377
exons per gene 2.69 2
# of gene models 11890


Collaborators

Kim Plummer, La Trobe University
Joanna Bowen, The New Zealand Institute for Plant & Food Research Limited
Cecilia Deng, The New Zealand Institute for Plant & Food Research Limited

Genome Reference(s)

Funding

This project was not sequenced at the JGI.