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Info • Verpa conica TJ0815 v1.0

Status

[March 2020] The Verpa conica TJ0815 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Verpa conica TJ0815 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 45.51
Sequencing read coverage depth 482.5x
# of contigs 29
# of scaffolds 29
# of scaffolds >= 2Kbp 29
Scaffold N50 10
Scaffold L50 (Mbp) 1.52
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.72, 3.38, 3.32


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 40179 39105 97.3%
Ests est.fasta 164094241 162795821 99.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1883 1618
transcript 1659 1414
exon 432 272
intron 81 64
description:
protein length (aa) 471 380
exons per gene 3.84 3
# of gene models 11342


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.