Info • Verruculina enalia CBS 304.66 v1.0

Status

[July 2014] The Verruculina enalia genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R47710 (Gnerre et al., 2010).
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Verruculina enalia CBS 304.66 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 61.21
Sequencing read coverage depth 81.2x
# of contigs 1600
# of scaffolds 611
# of scaffolds >= 2Kbp 550
Scaffold N50 65
Scaffold L50 (Mbp) 0.25
# of gaps 989
% of scaffold length in gaps 5.3%
Three largest Scaffolds (Mbp) 1.25, 1.22, 1.17


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 31462 30730 97.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1664 1421
transcript 1500 1259
exon 529 320
intron 91 57
description:
protein length (aa) 431 346
exons per gene 2.84 2
# of gene models 13748


Collaborators

Joseph Spatafora, Oregon State University, USA
Pedro Crous and Manfred Binder at CBS-KNAW, The Netherlands.

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.