Status
The genome sequence and gene prediction of Volvariella volvaces were not determined by the JGI, but were recieved from Dapeng Bao ([email protected]) and have been published (pubmed: 23526973). Please note that this copy of the genome is not maintained by the author and is therefore not automatically updated. This copy of the genome does not include the mitochondrial chromosome or genes. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.
Summary statistics for the Volvariella volvacea V23 v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 35.72 |
| Sequencing read coverage depth | 190x |
| # of contigs | 1289 |
| # of scaffolds | 62 |
| # of scaffolds >= 2Kbp | 62 |
| Scaffold N50 | 9 |
| Scaffold L50 (Mbp) | 0.93 |
| # of gaps | 1227 |
| % of scaffold length in gaps | 0.3% |
| Three largest Scaffolds (Mbp) | 3.95, 2.58, 2.43 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 2087 | 1652 |
| transcript | 1571 | 1281 |
| exon | 229 | 129 |
| intron | 90 | 58 |
| description: | ||
| protein length (aa) | 524 | 427 |
| exons per gene | 6.86 | 5 |
| # of gene models | 11084 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Bao D, Gong M, Zheng H, Chen M, Zhang L, Wang H, Jiang J, Wu L, Zhu Y, Zhu G, Zhou Y, Li C, Wang S, Zhao Y, Zhao G, Tan Q
Sequencing and comparative analysis of the straw mushroom (Volvariella volvacea) genome.
PLoS One. 2013;8(3):e58294. doi: 10.1371/journal.pone.0058294
Bao D, Gong M, Zheng H, Chen M, Zhang L, Wang H, Jiang J, Wu L, Zhu Y, Zhu G, Zhou Y, Li C, Wang S, Zhao Y, Zhao G, Tan Q
Sequencing and comparative analysis of the straw mushroom (Volvariella volvacea) genome.
PLoS One. 2013;8(3):e58294. doi: 10.1371/journal.pone.0058294
Funding
This project was not sequenced at the JGI.
