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Info • Vuilleminia comedens VcCUCC2015_SSI3 v1.0

Status

[May 2017] The Vuilleminia comedens VcCUCC2015_SSI3 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Vuilleminia comedens v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 61.63
Sequencing read coverage depth 95.84x
# of contigs 125
# of scaffolds 125
# of scaffolds >= 2Kbp 125
Scaffold N50 18
Scaffold L50 (Mbp) 1.08
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.81, 3.43, 2.50


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 69215 65287 94.3%
Ests est.fasta 120896426 120192900 99.4%


Gene Models FilteredModels2
length (bp) of: average median
gene 1669 1428
transcript 1364 1167
exon 250 153
intron 70 56
description:
protein length (aa) 402 328
exons per gene 5.45 4
# of gene models 22331


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.