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Info • Vuilleminia comedens VcCUCC2015_SSI6 v1.0


[January 2017] The Vuilleminia comedens VcCUCC2015_SSI6 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Vuilleminia comedens VcCUCC2015_SSI6 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 59.29
Sequencing read coverage depth 67.44x
# of contigs 169
# of scaffolds 169
# of scaffolds >= 2Kbp 168
Scaffold N50 23
Scaffold L50 (Mbp) 0.71
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.42, 3.08, 2.67

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 63352 59645 94.1%
Ests est.fasta 89271002 88169103 98.8%

Gene Models FilteredModels3
length (bp) of: average median
gene 1672 1433
transcript 1370 1169
exon 249 153
intron 69 56
protein length (aa) 403 331
exons per gene 5.50 4
# of gene models 21775


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.