Status
This genome was sequenced by Zajc J, Liu Y, Dai W, Yang Z, Hu J, Gostincar C, Gunde-Cimerman N in Department of Biology, Biotechnical Faculty, University of Ljubljana, Vecna pot 111, SI-1000 Ljubljana, Slovenia (Genome and transcriptome sequencing of the halophilic fungus Wallemia ichthyophaga: haloadaptations present and absent). Please check their data use policies.
Summary statistics for the Wallemia ichthyophaga EXF-994
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 9.66 |
| Sequencing read coverage depth | 280x |
| # of contigs | 95 |
| # of scaffolds | 82 |
| # of scaffolds >= 2Kbp | 58 |
| Scaffold N50 | 9 |
| Scaffold L50 (Mbp) | 0.44 |
| # of gaps | 13 |
| % of scaffold length in gaps | 0.3% |
| Three largest Scaffolds (Mbp) | 0.79, 0.72, 0.57 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1599 | 1275 |
| transcript | 1452 | 1152 |
| exon | 425 | 199 |
| intron | 63 | 50 |
| description: | ||
| protein length (aa) | 484 | 384 |
| exons per gene | 3.42 | 3 |
| # of gene models | 4863 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Zajc J, Liu Y, Dai W, Yang Z, Hu J, Gostinčar C, Gunde-Cimerman N
Genome and transcriptome sequencing of the halophilic fungus Wallemia ichthyophaga: haloadaptations present and absent.
BMC Genomics. 2013 Sep 13;14():617. doi: 10.1186/1471-2164-14-617
Zajc J, Liu Y, Dai W, Yang Z, Hu J, Gostinčar C, Gunde-Cimerman N
Genome and transcriptome sequencing of the halophilic fungus Wallemia ichthyophaga: haloadaptations present and absent.
BMC Genomics. 2013 Sep 13;14():617. doi: 10.1186/1471-2164-14-617
Funding
This project was not sequenced at the JGI.
