Info • Wallemia ichthyophaga EXF-994

Status

This genome was sequenced by Zajc J, Liu Y, Dai W, Yang Z, Hu J, Gostincar C, Gunde-Cimerman N in Department of Biology, Biotechnical Faculty, University of Ljubljana, Vecna pot 111, SI-1000 Ljubljana, Slovenia (Genome and transcriptome sequencing of the halophilic fungus Wallemia ichthyophaga: haloadaptations present and absent). Please check their data use policies.

Summary statistics for the Wallemia ichthyophaga EXF-994 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 9.66
Sequencing read coverage depth 280x
# of contigs 95
# of scaffolds 82
# of scaffolds >= 2Kbp 58
Scaffold N50 9
Scaffold L50 (Mbp) 0.44
# of gaps 13
% of scaffold length in gaps 0.3%
Three largest Scaffolds (Mbp) 0.79, 0.72, 0.57


Gene Models ExternalModels
length (bp) of: average median
gene 1599 1275
transcript 1452 1152
exon 425 199
intron 63 50
description:
protein length (aa) 484 384
exons per gene 3.42 3
# of gene models 4863


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Zajc J, Liu Y, Dai W, Yang Z, Hu J, Gostinčar C, Gunde-Cimerman N
Genome and transcriptome sequencing of the halophilic fungus Wallemia ichthyophaga: haloadaptations present and absent.
BMC Genomics. 2013 Sep 13;14():617. doi: 10.1186/1471-2164-14-617

Funding

This project was not sequenced at the JGI.