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Info • Westerdykella ornata CBS 379.55 v1.0

Status

[July 2014] The Westerdykella ornata genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R47710 (Gnerre et al., 2010).
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Westerdykella ornata CBS 379.55 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 26.98
Sequencing read coverage depth 162.1x
# of contigs 180
# of scaffolds 94
# of scaffolds >= 2Kbp 85
Scaffold N50 10
Scaffold L50 (Mbp) 0.80
# of gaps 86
% of scaffold length in gaps 0.3%
Three largest Scaffolds (Mbp) 2.76, 1.85, 1.81


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 24182 19725 81.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1766 1511
transcript 1624 1379
exon 585 366
intron 82 57
description:
protein length (aa) 459 373
exons per gene 2.78 2
# of gene models 10410


Collaborators

Joseph Spatafora, Oregon State University, USA
Pedro Crous and Manfred Binder at CBS-KNAW, The Netherlands.

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.