Info • Whalleya microplaca YMJ1829 v1.0

Status

[August 2019] The Whalleya microplaca YMJ1829 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Whalleya microplaca YMJ1829 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 48.32
Sequencing read coverage depth 97.8521771586x
# of contigs 148
# of scaffolds 145
# of scaffolds >= 2Kbp 144
Scaffold N50 23
Scaffold L50 (Mbp) 0.65
# of gaps 3
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.96, 1.75, 1.55


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 56934 56010 98.4%
Ests est.fasta 171487768 170390398 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 2029 1800
transcript 1843 1621
exon 602 380
intron 93 65
description:
protein length (aa) 482 403
exons per gene 3.06 3
# of gene models 12553


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.