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Info • Wolfiporia cocos MD-104 SS10 v1.0

Status

Assembly v1 (September 2010) is a draft assembly of 454 and Sanger gDNA reads, and shredded Velvet contigs. The latter were assembled from Solexa gDNA reads. A total of 348 scaffolds and 50.8 Mbp were assembled using Newbler.

Summary statistics for the Wolfiporia cocos v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 50.48
Sequencing read coverage depth 40.48x
# of contigs 2228
# of scaffolds 348
# of scaffolds >= 2Kbp 348
Scaffold N50 7
Scaffold L50 (Mbp) 2.54
# of gaps 940
% of scaffold length in gaps 4.4%
Three largest Scaffolds (Mbp) 5.11, 4.03, 3.94


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests ESTs 1311441 1265180 96.5%
Other EST contigs 12377 11329 91.5%


Gene Models FilteredModels2
length (bp) of: average median
gene 2035 1634
transcript 1529 1262
exon 242 146
intron 97 57
description:
protein length (aa) 409 333
exons per gene 6.31 5
# of gene models 12746


Collaborators

Genome Reference(s)

Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.