BLAST function on our site is limited to a single organism due to maintenance activity on our computational cluster.
Info • Xanthoria parietina 46-1 v1.0
Please note that this organism is for archival use only. Please see the current Xanthoria parietina 46-1-SA22 v1.1 site for the latest data and information.

Status

Assembly v1.0 (January 2011) is a draft assembly of 454 gDNA reads and shredded Velvet contigs. The latter were assembled from Solexa gDNA reads. A total of 39 scaffolds and 31.9 Mbp were assembled using Newbler.

Summary statistics for the Xanthoria parietina v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 31.90
Sequencing read coverage depth 43.84x
# of contigs 302
# of scaffolds 39
# of scaffolds >= 2Kbp 39
Scaffold N50 7
Scaffold L50 (Mbp) 1.73
# of gaps 263
% of scaffold length in gaps 0.3%
Three largest Scaffolds (Mbp) 3.93, 2.80, 2.31


Gene Models FilteredModels1
length (bp) of: average median
gene 1505 1212
transcript 1296 1047
exon 435 238
intron 108 60
description:
protein length (aa) 432 349
exons per gene 2.98 2
# of gene models 10818


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.