Info • Xenasmatella vaga CBS212.54 v1.0


(May 2016) The Xenasmatella vaga CBS212.54 genome was sequenced using Illumina technology, assembled with AllPathsLG version R49403, and annotated with the JGI annotation pipeline. The mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Xenasmatella vaga CBS212.54 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 64.17
Sequencing read coverage depth 91.3x
# of contigs 3416
# of scaffolds 1275
# of scaffolds >= 2Kbp 1032
Scaffold N50 90
Scaffold L50 (Mbp) 0.19
# of gaps 2141
% of scaffold length in gaps 4.8%
Three largest Scaffolds (Mbp) 0.97, 0.87, 0.86

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 121107 115169 95.1%
Ests est.fasta 221215655 213439875 96.5%

Gene Models FilteredModels1
length (bp) of: average median
gene 1626 1379
transcript 1320 1106
exon 258 159
intron 76 62
protein length (aa) 381 309
exons per gene 5.11 4
# of gene models 20933


Jon Magnuson, Pacific Northwest National Laboratory

Joseph W. Spatafora, Oregon State University


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.