Info • Xerocomus badius 84.06 v1.0

Status

Assembly v1 (December 2014) is a minimal draft assembly, using Illumina gDNAs assembled successively with Velvet and AllPathsLG.

Summary statistics for the Xerocomus badius 84.06 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 38.39
Sequencing read coverage depth 166.4x
# of contigs 2580
# of scaffolds 1390
# of scaffolds >= 2Kbp 1092
Scaffold N50 110
Scaffold L50 (Mbp) 0.09
# of gaps 1190
% of scaffold length in gaps 3.8%
Three largest Scaffolds (Mbp) 1.23, 0.86, 0.65


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 58973 55921 94.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1603 1287
transcript 1315 1040
exon 242 149
intron 67 56
description:
protein length (aa) 379 286
exons per gene 5.44 4
# of gene models 14938


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.