Status
Assembly v1 (December 2014) is a minimal draft assembly, using Illumina gDNAs assembled successively with Velvet and AllPathsLG.
Summary statistics for the Xerocomus badius 84.06 v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 38.39 |
| Sequencing read coverage depth | 166.4x |
| # of contigs | 2580 |
| # of scaffolds | 1390 |
| # of scaffolds >= 2Kbp | 1092 |
| Scaffold N50 | 110 |
| Scaffold L50 (Mbp) | 0.09 |
| # of gaps | 1190 |
| % of scaffold length in gaps | 3.8% |
| Three largest Scaffolds (Mbp) | 1.23, 0.86, 0.65 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | JGI_RNA_contigs | 58973 | 55921 | 94.8% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1603 | 1287 |
| transcript | 1315 | 1040 |
| exon | 242 | 149 |
| intron | 67 | 56 |
| description: | ||
| protein length (aa) | 379 | 286 |
| exons per gene | 5.44 | 4 |
| # of gene models | 14938 |
Collaborators
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
