Info • Xylaria sp. CBS 124048 v1.0

Status

[August 2019] The Xylaria sp. CBS 124048 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Xylaria sp. CBS 124048 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 33.73
Sequencing read coverage depth 150.22x
# of contigs 362
# of scaffolds 310
# of scaffolds >= 2Kbp 270
Scaffold N50 41
Scaffold L50 (Mbp) 0.27
# of gaps 52
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.86, 0.75, 0.72


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 62063 59305 95.6%
Ests est.fasta 184894722 183553490 99.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 2052 1837
transcript 1847 1636
exon 617 375
intron 105 76
description:
protein length (aa) 480 400
exons per gene 2.99 3
# of gene models 8901


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.