Info • Xylaria sp. FL0064 v1.0

Status

[December 2019] The Xylaria sp. FL0064 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Xylaria sp. FL0064 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 42.83
Sequencing read coverage depth 473.4x
# of contigs 79
# of scaffolds 79
# of scaffolds >= 2Kbp 79
Scaffold N50 13
Scaffold L50 (Mbp) 1.10
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.95, 2.44, 2.12


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 60742 60030 98.8%
Ests est.fasta 159906757 159194613 99.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 2041 1819
transcript 1839 1628
exon 579 361
intron 94 68
description:
protein length (aa) 483 404
exons per gene 3.18 3
# of gene models 12075


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.