Info • Xylariomycetidae sp. FL0641 v1.0

Status

[June 2019] The Xylariomycetidae sp. FL0641 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Xylariomycetidae sp. FL0641 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 38.11
Sequencing read coverage depth 157.03x
# of contigs 213
# of scaffolds 213
# of scaffolds >= 2Kbp 213
Scaffold N50 33
Scaffold L50 (Mbp) 0.38
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.17, 1.07, 0.96


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 57952 54743 94.5%
Ests est.fasta 231706363 225216777 97.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1950 1730
transcript 1774 1558
exon 616 386
intron 96 67
description:
protein length (aa) 469 388
exons per gene 2.88 2
# of gene models 11789


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.