Info • Xylariaceae sp. FL0804 v2.0

Status

[December 2019] The Xylariaceae sp. FL0804 v2.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Xylariaceae sp. FL0804 v2.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 45.70
Sequencing read coverage depth 205.75x
# of contigs 28
# of scaffolds 28
# of scaffolds >= 2Kbp 28
Scaffold N50 5
Scaffold L50 (Mbp) 3.47
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 5.55, 5.22, 5.12


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 58781 57832 98.4%
Ests est.fasta 205893133 204925819 99.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 2033 1825
transcript 1789 1577
exon 587 354
intron 121 80
description:
protein length (aa) 470 393
exons per gene 3.05 3
# of gene models 11806


Collaborators

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.