Info • Xylaria sp. FL1777 v1.0

Status

[June 2019] The Xylaria sp. FL1777 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Xylaria sp FL1777 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 60.31
Sequencing read coverage depth 101.352069664x
# of contigs 976
# of scaffolds 948
# of scaffolds >= 2Kbp 855
Scaffold N50 69
Scaffold L50 (Mbp) 0.24
# of gaps 28
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.14, 0.90, 0.89


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 76424 67796 88.7%
Ests est.fasta 319663781 317256968 99.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 2051 1832
transcript 1843 1637
exon 582 354
intron 98 69
description:
protein length (aa) 485 405
exons per gene 3.16 3
# of gene models 11673


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.