Info • Xylariaceae sp. FL0016 v1.0

Status

[March 2019] The Xylariaceae sp. FL0016 genome was sequenced with Illumina, assembled with SPAdes v3.12.0, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Xylariaceae sp. FL0016 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 39.36
Sequencing read coverage depth 151.645097186x
# of contigs 97
# of scaffolds 91
# of scaffolds >= 2Kbp 88
Scaffold N50 17
Scaffold L50 (Mbp) 0.80
# of gaps 6
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.16, 1.73, 1.71


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 49670 46745 94.1%
Ests est.fasta 102075715 99465793 97.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1984 1779
transcript 1815 1611
exon 623 395
intron 91 64
description:
protein length (aa) 475 401
exons per gene 2.91 2
# of gene models 11844


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.