Info • Xylaria sp. FL0043 v1.0

Status

[March 2019] This genome was sequenced with Illumina, assembled with SPAdes v3.12.0, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Xylaria sp. FL0043 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 44.51
Sequencing read coverage depth 126.951952721x
# of contigs 946
# of scaffolds 933
# of scaffolds >= 2Kbp 612
Scaffold N50 38
Scaffold L50 (Mbp) 0.34
# of gaps 13
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.66, 1.35, 1.34


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 44887 40939 91.2%
Ests est.fasta 111632129 109473155 98.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 2036 1797
transcript 1835 1601
exon 586 364
intron 96 69
description:
protein length (aa) 490 412
exons per gene 3.13 3
# of gene models 11819


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.