Info • Xylariaceae sp. FL0255 v1.0

Status

[March 2019] The Xylariaceae sp. FL0255 genome was sequenced with Illumina, assembled with SPAdes v3.12.0, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Xylariaceae sp. FL0255 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 50.39
Sequencing read coverage depth 118.08008789x
# of contigs 543
# of scaffolds 512
# of scaffolds >= 2Kbp 443
Scaffold N50 46
Scaffold L50 (Mbp) 0.31
# of gaps 31
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.59, 1.49, 1.12


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 45541 43648 95.8%
Ests est.fasta 112025281 110224230 98.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1954 1734
transcript 1765 1547
exon 582 361
intron 95 68
description:
protein length (aa) 469 389
exons per gene 3.03 3
# of gene models 13390


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.