Info • Xylariaceae sp. FL0662B v1.0

Status

[March 2019] The Xylariaceae sp. FL0662B genome was sequenced with PacBio, assembled with Falcon v1.8.8, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Xylariaceae sp. FL0662B v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 45.91
Sequencing read coverage depth 233.17x
# of contigs 470
# of scaffolds 470
# of scaffolds >= 2Kbp 455
Scaffold N50 61
Scaffold L50 (Mbp) 0.22
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.08, 0.96, 0.91


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 66303 61319 92.5%
Ests est.fasta 196207645 190953424 97.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 2000 1776
transcript 1802 1590
exon 585 362
intron 97 66
description:
protein length (aa) 473 394
exons per gene 3.08 3
# of gene models 11917


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.