Info • Xylariaceae sp. FL1019 v1.0

Status

[March 2019] The Xylariaceae sp. FL1019 genome was sequenced with Illumina, assembled with SPAdes v3.12.0, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Xylariaceae sp. FL1019 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 51.35
Sequencing read coverage depth 117.024338524x
# of contigs 128
# of scaffolds 102
# of scaffolds >= 2Kbp 100
Scaffold N50 18
Scaffold L50 (Mbp) 0.93
# of gaps 26
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.07, 2.48, 2.37


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 53149 51948 97.7%
Ests est.fasta 99616889 98063332 98.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1961 1743
transcript 1776 1563
exon 595 370
intron 95 66
description:
protein length (aa) 470 392
exons per gene 2.98 2
# of gene models 12419


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.