Info • Xylariaceae sp. FL1651 v1.0

Status

[March 2019] This genome was sequenced with Illumina, assembled with SPAdes v3.12.0, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Xylariaceae sp. FL1651 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 52.59
Sequencing read coverage depth 113.234311301x
# of contigs 177
# of scaffolds 146
# of scaffolds >= 2Kbp 145
Scaffold N50 18
Scaffold L50 (Mbp) 0.98
# of gaps 31
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.28, 2.09, 2.05


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 63708 62175 97.6%
Ests est.fasta 93579243 91955039 98.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 2015 1791
transcript 1817 1602
exon 587 356
intron 97 66
description:
protein length (aa) 488 406
exons per gene 3.09 3
# of gene models 12860


Collaborators

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.