Info • Xylariales sp. PMI_506 v1.0

Status

[November 2016] The Xylariales sp. PMI_506 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Xylariales sp. PMI_506 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 51.30
Sequencing read coverage depth 103.41x
# of contigs 26
# of scaffolds 26
# of scaffolds >= 2Kbp 26
Scaffold N50 7
Scaffold L50 (Mbp) 2.64
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 6.93, 4.07, 3.67


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 41134 40746 99.1%
Ests est.fasta 98549424 98151991 99.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1743 1561
transcript 1576 1398
exon 563 348
intron 95 75
description:
protein length (aa) 463 399
exons per gene 2.80 2
# of gene models 17035


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.