Info • Xylogone sp. PMI_703 v1.0

Status

[July 2019] The nuclear genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Xylogone sp. PMI_703 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 50.15
Sequencing read coverage depth 44.98x
# of contigs 28
# of scaffolds 28
# of scaffolds >= 2Kbp 28
Scaffold N50 3
Scaffold L50 (Mbp) 8.06
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 9.08, 8.21, 8.06


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 65058 62041 95.4%
Ests est.fasta 158465621 157333447 99.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1807 1605
transcript 1648 1456
exon 521 328
intron 75 60
description:
protein length (aa) 465 395
exons per gene 3.17 3
# of gene models 16491


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.