Info • Xylaria acuta CBS 122032 v1.0

Status

[June 2019] The Xylaria acuta CBS 122032 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Xylaria acuta CBS 122032 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 47.20
Sequencing read coverage depth 73.5058520139x
# of contigs 807
# of scaffolds 761
# of scaffolds >= 2Kbp 585
Scaffold N50 41
Scaffold L50 (Mbp) 0.36
# of gaps 46
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.47, 0.95, 0.94


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 54620 53154 97.3%
Ests est.fasta 134717547 133484009 99.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 2013 1789
transcript 1810 1595
exon 576 357
intron 97 68
description:
protein length (aa) 475 394
exons per gene 3.14 3
# of gene models 12486


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.