Due to a planned NERSC power outage, JGI portals will be unavailable 6:00am PDT July 10 - 11:59pm PDT July 14. System Status updates available here.
Info • Xylaria bambusicola CBS 139988 v1.0

Status

[June 2019] The Xylaria bambusicola CBS 139988 v1.0 genome was sequenced with Illumina, assembled with SPAdes v3.13.0, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Xylaria bambusicola CBS 139988 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 45.71
Sequencing read coverage depth 80.58x
# of contigs 251
# of scaffolds 233
# of scaffolds >= 2Kbp 212
Scaffold N50 23
Scaffold L50 (Mbp) 0.56
# of gaps 18
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.30, 2.26, 1.66


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 56785 55957 98.5%
Ests est.fasta 169364667 167883151 99.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 2035 1804
transcript 1837 1616
exon 585 362
intron 94 68
description:
protein length (aa) 482 401
exons per gene 3.14 3
# of gene models 12121


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.