Info • Xylaria crozonensis 398 v1.0

Status

[June 2022] The Xylaria crozonensis 398 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section

Genome Assembly
Genome Assembly size (Mbp) 40.80
Sequencing read coverage depth 185.37x
# of contigs 262
# of scaffolds 254
# of scaffolds >= 2Kbp 194
Scaffold N50 20
Scaffold L50 (Mbp) 0.76
# of gaps 8
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.67, 1.64, 1.50


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 48750 48232 98.9%
Ests est.fasta 101791162 101116609 99.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 2038 1810
transcript 1855 1640
exon 600 380
intron 89 66
description:
protein length (aa) 481 398
exons per gene 3.09 3
# of gene models 12442


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.