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Info • Xylaria curta 92092022 v1.0

Status

[September 2020] The Xylaria curta 92092022 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Xylaria curta 92092022 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 54.26
Sequencing read coverage depth 111.47x
# of contigs 545
# of scaffolds 509
# of scaffolds >= 2Kbp 446
Scaffold N50 36
Scaffold L50 (Mbp) 0.43
# of gaps 36
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.02, 1.73, 1.45


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 42886 41061 95.7%
Ests est.fasta 122377698 121278161 99.1%


Gene Models FilteredModels2
length (bp) of: average median
gene 2060 1814
transcript 1864 1631
exon 591 369
intron 93 67
description:
protein length (aa) 494 413
exons per gene 3.16 3
# of gene models 12274


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.