Info • Xylaria digitata 919 v1.0

Status

[November 2022] The Xylaria digitata 919 v1.0 genome was sequenced with Illumina, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 66.57
Sequencing read coverage depth 18.22x
# of contigs 452
# of scaffolds 452
# of scaffolds >= 2Kbp 452
Scaffold N50 28
Scaffold L50 (Mbp) 0.42
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 5.23, 3.53, 2.13


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 50430 48274 95.7%
Ests est.fasta 181185082 179683613 99.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 2009 1789
transcript 1807 1594
exon 570 353
intron 95 68
description:
protein length (aa) 477 397
exons per gene 3.17 3
# of gene models 13075


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.