Status
Assembly v1 (August 2013) is a standard draft assembly of Solexa gDNA reads. A total of 27 scaffolds and 24.3 Mbp were assembled using AllPathsLG.
Summary statistics for the Xylona heveae TC161 v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 24.34 |
| Sequencing read coverage depth | 124.5x |
| # of contigs | 56 |
| # of scaffolds | 27 |
| # of scaffolds >= 2Kbp | 25 |
| Scaffold N50 | 5 |
| Scaffold L50 (Mbp) | 1.91 |
| # of gaps | 29 |
| % of scaffold length in gaps | 0.1% |
| Three largest Scaffolds (Mbp) | 3.32, 3.13, 2.71 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | JGI_RNA_contigs | 23510 | 22911 | 97.5% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1955 | 1712 |
| transcript | 1735 | 1497 |
| exon | 509 | 309 |
| intron | 93 | 67 |
| description: | ||
| protein length (aa) | 489 | 407 |
| exons per gene | 3.41 | 3 |
| # of gene models | 8205 |
Collaborators
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Gazis R, Kuo A, Riley R, LaButti K, Lipzen A, Lin J, Amirebrahimi M, Hesse CN, Spatafora JW, Henrissat B, Hainaut M, Grigoriev IV, Hibbett DS
The genome of Xylona heveae provides a window into fungal endophytism.
Fungal Biol. 2016 Jan;120(1):26-42. doi: 10.1016/j.funbio.2015.10.002
Gazis R, Kuo A, Riley R, LaButti K, Lipzen A, Lin J, Amirebrahimi M, Hesse CN, Spatafora JW, Henrissat B, Hainaut M, Grigoriev IV, Hibbett DS
The genome of Xylona heveae provides a window into fungal endophytism.
Fungal Biol. 2016 Jan;120(1):26-42. doi: 10.1016/j.funbio.2015.10.002
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
