Info • Xylaria hypoxylon OSC100004 v1.0


(May 2016) The Xylaria hypoxylon OSC100004 genome was sequenced using Illumina technology, assembled with AllPathsLG release version R49403, and annotated with the JGI annotation pipeline. The mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Xylaria hypoxylon v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 42.85
Sequencing read coverage depth 148.6x
# of contigs 1015
# of scaffolds 990
# of scaffolds >= 2Kbp 553
Scaffold N50 55
Scaffold L50 (Mbp) 0.22
# of gaps 25
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.95, 0.89, 0.79

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 40140 38203 95.2%
Ests est.fasta 225582918 218310003 96.8%

Gene Models FilteredModels1
length (bp) of: average median
gene 1776 1552
transcript 1586 1368
exon 530 330
intron 97 68
protein length (aa) 442 363
exons per gene 2.99 2
# of gene models 13084


Joseph W. Spatafora, Oregon State University

Derek Johnson, Oregon State University


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.