Status
(May 2016) The Xylaria hypoxylon OSC100004 genome was sequenced using Illumina technology, assembled with AllPathsLG release version R49403, and annotated with the JGI annotation pipeline. The mitochondrial genome was assembled separately and is available in the downloads section.
Summary statistics for the Xylaria hypoxylon v1.0 release
are below.
Genome Assembly | |
Genome Assembly size (Mbp) | 42.85 |
Sequencing read coverage depth | 148.6x |
# of contigs | 1015 |
# of scaffolds | 990 |
# of scaffolds >= 2Kbp | 553 |
Scaffold N50 | 55 |
Scaffold L50 (Mbp) | 0.22 |
# of gaps | 25 |
% of scaffold length in gaps | 0.0% |
Three largest Scaffolds (Mbp) | 0.95, 0.89, 0.79 |
ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
EstClusters | ESTclusters | 40140 | 38203 | 95.2% |
Ests | est.fasta | 225582918 | 218310003 | 96.8% |
Gene Models | FilteredModels1 | |
length (bp) of: | average | median |
gene | 1776 | 1552 |
transcript | 1586 | 1368 |
exon | 530 | 330 |
intron | 97 | 68 |
description: | ||
protein length (aa) | 442 | 363 |
exons per gene | 2.99 | 2 |
# of gene models | 13084 |
Collaborators
Joseph W. Spatafora, Oregon State University
Derek Johnson, Oregon State University
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.