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Info • Xylaria intraflava YMJ 725 v1.0

Status

[June 2019] The Xylaria intraflava YMJ 725 v1.0 genome was sequenced with Illumina, assembled with SPAdes v3.13.0, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Xylaria intraflava YMJ 725 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 35.93
Sequencing read coverage depth 106.81x
# of contigs 462
# of scaffolds 438
# of scaffolds >= 2Kbp 342
Scaffold N50 42
Scaffold L50 (Mbp) 0.23
# of gaps 24
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.07, 0.87, 0.79


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 46468 45598 98.1%
Ests est.fasta 161344931 160719140 99.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 2053 1812
transcript 1864 1625
exon 619 382
intron 96 70
description:
protein length (aa) 490 405
exons per gene 3.01 3
# of gene models 9861


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.