Status
[August 2022] The Xylaria pallida CIRM-BRFM 1448 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 57.25 |
| Sequencing read coverage depth | 110.97x |
| # of contigs | 649 |
| # of scaffolds | 622 |
| # of scaffolds >= 2Kbp | 561 |
| Scaffold N50 | 32 |
| Scaffold L50 (Mbp) | 0.58 |
| # of gaps | 27 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 1.95, 1.80, 1.62 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 51024 | 50363 | 98.7% |
| Ests | est.fasta | 159999067 | 158994007 | 99.4% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 2076 | 1845 |
| transcript | 1884 | 1655 |
| exon | 607 | 381 |
| intron | 93 | 69 |
| description: | ||
| protein length (aa) | 486 | 405 |
| exons per gene | 3.11 | 3 |
| # of gene models | 11790 |
Collaborators
- Jana M. U'Ren, University of Arizona, AZ
- A. Elizabeth Arnold, University of Arizona, AZ
- Jennifer H. Wisecaver, Purdue University, IN
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Xylariales
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
