Info • Xylaria telfairii CBS 121673 v1.0

Status

[June 2019] The Xylaria telfairii CBS 121673 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Xylaria telfairii CBS 121673 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 46.92
Sequencing read coverage depth 82.845827760075x
# of contigs 1051
# of scaffolds 1027
# of scaffolds >= 2Kbp 735
Scaffold N50 66
Scaffold L50 (Mbp) 0.20
# of gaps 24
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.99, 0.88, 0.71


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 58218 56944 97.8%
Ests est.fasta 234978959 233656898 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 2056 1821
transcript 1854 1624
exon 583 362
intron 94 68
description:
protein length (aa) 490 406
exons per gene 3.18 3
# of gene models 12758


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.