Info • Yarrowia lipolytica YB392 v1.0

Status

[March 2018] The Yarrowia lipolytica YB392 genome was sequenced with Illumina HiSeq-2500, assembled with SPAdes version 3.11.1, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Yarrowia lipolytica YB392 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 20.18
Sequencing read coverage depth 734.70x
# of contigs 362
# of scaffolds 352
# of scaffolds >= 2Kbp 331
Scaffold N50 58
Scaffold L50 (Mbp) 0.12
# of gaps 10
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.40, 0.36, 0.30


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 16328 15635 95.8%
Ests est.fasta 151880071 150965161 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1667 1432
transcript 1590 1379
exon 1212 1069
intron 248 140
description:
protein length (aa) 458 386
exons per gene 1.31 1
# of gene models 6750


Collaborators

Cong Trinh, University of Tennessee, Knoxville

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Walker C, Ryu S, Na H, Zane M, LaButti K, Lipzen A, Haridas S, Barry K, Grigoriev IV, Quarterman J, Slininger P, Dien B, Trinh CT
Draft Genome Assemblies of Five Robust Yarrowia lipolytica Strains Exhibiting High Lipid Production, Pentose Sugar Utilization, and Sugar Alcohol Secretion from Undetoxified Lignocellulosic Biomass Hydrolysates.
Microbiol Resour Announc. 2018 Sep;7(12):. doi: 10.1128/MRA.01040-18

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.